STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0858Redox protein, regulator of disulfide bond formation. (139 aa)    
Predicted Functional Partners:
kat
Catalase; Belongs to the catalase family.
  
  
 0.600
lp_1693a
Transcription regulator, C-terminal fragment.
   
    0.586
lp_1708
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.552
pepX
Xaa-Pro dipeptidyl-peptidase; Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline; Belongs to the peptidase S15 family.
       0.537
dps1
DNA-binding ferritin-like protein, DPS family; Belongs to the Dps family.
  
  
 0.529
cblB
Cystathionine beta-lyase / cystathionine gamma-lyase.
  
  
 0.508
dps2
DNA-binding ferritin-like protein, DPS family; Belongs to the Dps family.
  
  
 0.499
rexB
ATP-dependent nuclease, subunit B; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' -> 3' nuclease activity; Belongs to the helicase family. AddB/RexB type 2 subfamily.
   
    0.487
lp_0081
ThiJ/PfpI family protein, Type 1 glutamine amidotransferase (GATase1)-like domain.
  
  
 0.468
lp_2443
Prophage P2a protein 14.
   
    0.449
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.