STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_0868Metal uptake regulator; Belongs to the Fur family. (147 aa)    
Predicted Functional Partners:
gmk2
Guanylate kinase.
  
    0.716
lp_0869
Extracellular protein, Ser/Thr-rich.
  
    0.686
lp_0871
Hypothetical membrane protein.
  
    0.674
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.637
rpoD
DNA-directed RNA polymerase, sigma factor 42; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.618
mtsC
Manganese ABC transporter, ATP-binding protein.
 
  
 0.609
mtsA
Manganese/zinc ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.590
znuB
Zinc/iron ABC transporter, permease protein.
 
  
 0.583
mtsB
Manganese ABC transporter, permease protein.
 
  
 0.557
znuC
Zinc/iron ABC transporter, ATP-binding protein.
  
  
 0.540
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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