lp_0923 protein (Lactobacillus plantarum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

lp_0923

Cell surface protein precursor, LPXTG-motif cell wall anchor. (806 aa)

Predicted Functional Partners:

lp_3064

0.793

lp_2975

0.787

lp_2486

0.784

lp_3127

0.782

lp_0800

0.781

lp_3114

0.776

lp_3333

0.776

zmp2

0.763

lp_1256

0.751

lp_3006

0.749

Your Current Organism:

Lactobacillus plantarum

NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
lp_0800	lp_0923	lp_0800	lp_0923	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Cell surface protein precursor, LPXTG-motif cell wall anchor.	0.781
lp_0800	lp_1256	lp_0800	lp_1256	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Extracellular protein.	0.608
lp_0800	lp_2486	lp_0800	lp_2486	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Mucus-binding protein, LPXTG-motif cell wall anchor.	0.692
lp_0800	lp_2975	lp_0800	lp_2975	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Cell surface protein, CscC family.	0.709
lp_0800	lp_3006	lp_0800	lp_3006	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Transcription regulator, TetR family.	0.603
lp_0800	lp_3064	lp_0800	lp_3064	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Cell surface protein, CscC family.	0.728
lp_0800	lp_3127	lp_0800	lp_3127	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Mucus-binding protein, LPXTG-motif cell wall anchor.	0.722
lp_0800	lp_3333	lp_0800	lp_3333	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Hypothetical protein.	0.580
lp_0800	zmp2	lp_0800	lp_0600	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Extracellular zinc metalloproteinase, M10 family.	0.484
lp_0923	lp_0800	lp_0923	lp_0800	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Cell surface protein precursor, LPXTG-motif cell wall anchor.	0.781
lp_0923	lp_1256	lp_0923	lp_1256	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Extracellular protein.	0.751
lp_0923	lp_2486	lp_0923	lp_2486	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Mucus-binding protein, LPXTG-motif cell wall anchor.	0.784
lp_0923	lp_2975	lp_0923	lp_2975	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Cell surface protein, CscC family.	0.787
lp_0923	lp_3006	lp_0923	lp_3006	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Transcription regulator, TetR family.	0.749
lp_0923	lp_3064	lp_0923	lp_3064	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Cell surface protein, CscC family.	0.793
lp_0923	lp_3114	lp_0923	lp_3114	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Mucus-binding protein, LPXTG-motif cell wall anchor.	0.776
lp_0923	lp_3127	lp_0923	lp_3127	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Mucus-binding protein, LPXTG-motif cell wall anchor.	0.782
lp_0923	lp_3333	lp_0923	lp_3333	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Hypothetical protein.	0.776
lp_0923	zmp2	lp_0923	lp_0600	Cell surface protein precursor, LPXTG-motif cell wall anchor.	Extracellular zinc metalloproteinase, M10 family.	0.763
lp_1256	lp_0800	lp_1256	lp_0800	Extracellular protein.	Cell surface protein precursor, LPXTG-motif cell wall anchor.	0.608

page 1 of 6

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About