Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
asp1Alkaline shock protein. (140 aa)    
Predicted Functional Partners:
lp_0927
Hypothetical membrane protein.
  
    0.991
lp_0928
Hypothetical protein.
  
    0.991
asp2
Alkaline shock protein.
 
  
0.991
lp_0926
Hypothetical membrane protein.
 
  
 0.843
lp_1597
General stress protein, Gls24 family.
  
  
 0.661
lp_1708
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
  
 0.632
lp_1706
Hypothetical membrane protein.
 
    0.542
lp_3577
Hypothetical membrane protein.
 
  
 0.535
groES
GroES co-chaperonin; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.
   
  
 0.498
groEL
GroEL chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
  
 0.485
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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