hsdS3 protein (Lactobacillus plantarum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

hsdS3

Type I restriction-modification system,specificity subunit (fragment). (163 aa)

Predicted Functional Partners:

hsdM

0.949

hsdR

0.830

lp_2453

0.601

hsdS2

0.548

lp_3572

0.414

polA

0.400

Your Current Organism:

Lactobacillus plantarum

NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
hsdM	hsdR	lp_0939	lp_0938	Type I restriction-modification system,methylation subunit.	Type I restriction-modification system,restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.999
hsdM	hsdS2	lp_0939	lp_0942	Type I restriction-modification system,methylation subunit.	Type I restriction-modification system,specificity subunit (fragment).	0.949
hsdM	hsdS3	lp_0939	lp_0943	Type I restriction-modification system,methylation subunit.	Type I restriction-modification system,specificity subunit (fragment).	0.949
hsdM	lp_2453	lp_0939	lp_2453	Type I restriction-modification system,methylation subunit.	Prophage P2a protein 4; AAA ATPase.	0.556
hsdR	hsdM	lp_0938	lp_0939	Type I restriction-modification system,restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction-modification system,methylation subunit.	0.999
hsdR	hsdS2	lp_0938	lp_0942	Type I restriction-modification system,restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction-modification system,specificity subunit (fragment).	0.851
hsdR	hsdS3	lp_0938	lp_0943	Type I restriction-modification system,restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction-modification system,specificity subunit (fragment).	0.830
hsdR	lp_2453	lp_0938	lp_2453	Type I restriction-modification system,restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Prophage P2a protein 4; AAA ATPase.	0.797
hsdS2	hsdM	lp_0942	lp_0939	Type I restriction-modification system,specificity subunit (fragment).	Type I restriction-modification system,methylation subunit.	0.949
hsdS2	hsdR	lp_0942	lp_0938	Type I restriction-modification system,specificity subunit (fragment).	Type I restriction-modification system,restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.851
hsdS2	hsdS3	lp_0942	lp_0943	Type I restriction-modification system,specificity subunit (fragment).	Type I restriction-modification system,specificity subunit (fragment).	0.548
hsdS2	lp_2453	lp_0942	lp_2453	Type I restriction-modification system,specificity subunit (fragment).	Prophage P2a protein 4; AAA ATPase.	0.599
hsdS2	polA	lp_0942	lp_1508	Type I restriction-modification system,specificity subunit (fragment).	DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.400
hsdS3	hsdM	lp_0943	lp_0939	Type I restriction-modification system,specificity subunit (fragment).	Type I restriction-modification system,methylation subunit.	0.949
hsdS3	hsdR	lp_0943	lp_0938	Type I restriction-modification system,specificity subunit (fragment).	Type I restriction-modification system,restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.830
hsdS3	hsdS2	lp_0943	lp_0942	Type I restriction-modification system,specificity subunit (fragment).	Type I restriction-modification system,specificity subunit (fragment).	0.548
hsdS3	lp_2453	lp_0943	lp_2453	Type I restriction-modification system,specificity subunit (fragment).	Prophage P2a protein 4; AAA ATPase.	0.601
hsdS3	lp_3572	lp_0943	lp_3572	Type I restriction-modification system,specificity subunit (fragment).	FAD-dependent pyridine nucleotide-disulphide oxidoreductase.	0.414
hsdS3	polA	lp_0943	lp_1508	Type I restriction-modification system,specificity subunit (fragment).	DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.400
lp_2453	hsdM	lp_2453	lp_0939	Prophage P2a protein 4; AAA ATPase.	Type I restriction-modification system,methylation subunit.	0.556

page 1 of 2

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About