Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
lp_0973Esterase (short chain). (338 aa)    
Predicted Functional Partners:
lp_0122
Alpha-beta hydrolase superfamily.
     
 0.855
lp_2631
Lipase/esterase.
 
   
 0.839
lp_0796
Carboxylesterase.
      
 0.826
lp_1002
Lipase/esterase.
     
 0.815
lp_2923
Lipase/esterase.
     
 0.815
lp_3562
Lipase/esterase.
  
  
 0.808
lp_3561
Lipase/esterase.
     
 0.796
xylP2
Carbohydrate (isoprimoverose-like)/proton symporter, GPH family.
  
    0.785
estA
Acetyl esterase (promiscuous).
  
  
 0.711
lp_0297
Extracellular protein, CscC family.
  
 
 0.647
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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