Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
lp_1002Lipase/esterase. (264 aa)    
Predicted Functional Partners:
lp_2631
Lipase/esterase.
  
  
 0.823
lp_0796
Carboxylesterase.
      
 0.820
lp_0973
Esterase (short chain).
     
 0.815
estA
Acetyl esterase (promiscuous).
 
   
 0.729
lp_1003
Acetyltransferase, GNAT family.
 
     0.622
lp_1136
Oxidoreductase, NAD(P)-dependent.
   
  
 0.584
lp_0363
Purine nucleosidase.
  
    0.569
lp_3566
N-acetylglucosamine 2-epimerase.
   
  
 0.561
lp_1004
Transcription regulator, Rrf2 family.
       0.542
lp_3569
Transposase.
      
 0.537
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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