STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1023Type 4 prepilin-like proteins leader peptide processing enzyme. (226 aa)    
Predicted Functional Partners:
gspE
Bacterial type II secretion/trafficking system protein E, ATPase.
 
 
 0.902
dprA
DNA processing protein.
  
  
 0.748
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
  
    0.678
lp_2248
Bacterial type II secretion/trafficking system protein F.
 
  
 0.675
comEA
ComE operon protein 1, DNA receptor.
   
  
 0.668
comEC
ComE operon protein 3, DNA transport protein.
 
  
 0.646
lp_2247
Bacterial type II secretion/trafficking system protein.
  
  
 0.624
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
  
    0.623
ica3
Glycosyltransferase, family 2.
  
  
 0.577
mntH2
Manganese transport protein MntH, Nramp superfamily.
  
  
 0.527
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.