STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ndh2NADH dehydrogenase, membrane-anchored. (636 aa)    
Predicted Functional Partners:
hepA
Heptaprenyl diphosphate synthase component I.
    0.966
lp_1070
Lipoprotein precursor, FMN-binding protein.
 
  
 0.961
ndh1
NADH dehydrogenase.
  
  
0.941
hepB1
Heptaprenyl diphosphate synthase component II; Belongs to the FPP/GGPP synthase family.
 
  
 0.919
lp_1068
Extracellular protein, DUF1312 famliy.
 
    0.907
lp_1546
1,4-dihydroxy-2-naphthoate octaprenyltransferase, UbiA family.
 
  
 0.836
lp_1135
1,4-dihydroxy-2-naphthoate octaprenyltransferase.
 
  
 0.813
hepB2
Heptaprenyl diphosphate synthase component II; Belongs to the FPP/GGPP synthase family.
 
  
 0.802
lp_1715
1,4-dihydroxy-2-naphthoate octaprenyltransferase, UbiA prenyltransferase family.
 
  
 0.787
apbE1
Thiamin biosynthesis lipoprotein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
  
 0.742
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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