STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttdRTranscription regulator tartrate operon, AraC family. (341 aa)    
Predicted Functional Partners:
ttdA
L(+)-tartrate dehydratase, subunit A.
 
    0.840
ttdB
L(+)-tartrate dehydratase, subunit B.
 
    0.808
lp_3649
Transcription regulator, GntR family.
  
  
 0.766
lp_1821
Transcription regulator, MarR family.
   
  
 0.721
lp_1443
Transcription regulator, TetR family.
   
  
 0.717
lp_3079
Transcription regulator, PadR family.
   
  
 0.708
lp_0889
Transcription regulator, MarR family.
   
  
 0.666
lp_3415
Transcription regulator, AraC family.
 
     0.635
lp_3650
Regulator, Fis family.
   
  
 0.622
citG
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase.
 
    0.561
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.