Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
lp_1124Cell surface hydrolase, LPXTG-motif cell wall anchor. (901 aa)    
Predicted Functional Partners:
lp_2485
Hypothetical protein, DUF1975 family.
  
    0.605
lp_0154
Transcription regulator, PadR family.
 
     0.579
lp_1123
Hypothetical protein.
       0.572
lp_3417
Transcription regulator, TetR family.
  
    0.444
zmp1
Extracellular zinc metalloproteinase, M10 family.
  
    0.435
lp_3001
Cell surface protein precursor, LPXTG-motif cell wall anchor.
  
    0.405
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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