STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydCCytochrome D ABC transporter, ATP-binding and permease protein. (577 aa)    
Predicted Functional Partners:
cydD
Cytochrome D ABC transporter, ATP-binding and permease protein.
 
 
0.999
cydA
Cytochrome D ubiquinol oxidase, subunit I.
  
 0.994
cydB
Cytochrome D ubiquinol oxidase, subunit II.
 
  
 0.991
glnQ3
Glutamine ABC transporter, ATP-binding protein.
 
     
0.899
pstA
Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
 
   
0.893
metN1
D-methionine ABC transporter, ATP binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
   
0.791
lp_1135
1,4-dihydroxy-2-naphthoate octaprenyltransferase.
 
   
 0.755
ubiE
Menaquinone/ubiquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
 
  
 0.738
hepB2
Heptaprenyl diphosphate synthase component II; Belongs to the FPP/GGPP synthase family.
  
    0.681
ndh1
NADH dehydrogenase.
 
  
 0.670
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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