STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acm1Cell wall hydrolase/muramidase. (213 aa)    
Predicted Functional Partners:
lp_1242
Extracellular protein, NlpC/P60 family,gamma-D-glutamate-meso-diaminopimelate muropeptidase.
  
   
 0.837
lp_2520
Extracellular protein, NlpC/P60 family,gamma-D-glutamate-meso-diaminopimelate muropeptidase.
  
  
 0.821
lytH
N-acetylmuramoyl-L-alanine amidase; Probably involved in cell-wall metabolism. Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family.
  
 0.782
xpt
Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
  
    0.767
lp_2162
Extracellular protein, NlpC/P60 family,gamma-D-glutamate-meso-diaminopimelate muropeptidase.
     
 0.749
lys
Lysozyme.
      
 0.741
lp_3421
Extracellular protein,gamma-D-glutamate-meso-diaminopimelate muropeptidase.
      
 0.716
dacB
Serine-type D-Ala-D-Ala carboxypeptidase.
 
  
 0.679
pgsA
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
  
 0.640
lp_1140
Hypothetical membrane protein.
  
    0.569
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.