Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| clpB | cspC | lp_1903 | lp_0997 | ATP-dependent Clp protease, ATP-binding subunit ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity). Belongs to [...] | Cold shock protein CspC. | 0.548 |
| clpB | cspP | lp_1903 | lp_1160 | ATP-dependent Clp protease, ATP-binding subunit ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity). Belongs to [...] | Cold shock protein CspP. | 0.503 |
| cspC | clpB | lp_0997 | lp_1903 | Cold shock protein CspC. | ATP-dependent Clp protease, ATP-binding subunit ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity). Belongs to [...] | 0.548 |
| cspC | cspP | lp_0997 | lp_1160 | Cold shock protein CspC. | Cold shock protein CspP. | 0.735 |
| cspC | rplO | lp_0997 | lp_1055 | Cold shock protein CspC. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.555 |
| cspC | rplT | lp_0997 | lp_1517 | Cold shock protein CspC. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.508 |
| cspC | rpmA | lp_0997 | lp_1594 | Cold shock protein CspC. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.531 |
| cspC | rpmE | lp_0997 | lp_0512 | Cold shock protein CspC. | 50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. Type B subfamily. | 0.589 |
| cspC | rpmJ | lp_0997 | lp_1059a | Cold shock protein CspC. | 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.569 |
| cspC | rpsL | lp_0997 | lp_1025 | Cold shock protein CspC. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.603 |
| cspP | clpB | lp_1160 | lp_1903 | Cold shock protein CspP. | ATP-dependent Clp protease, ATP-binding subunit ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity). Belongs to [...] | 0.503 |
| cspP | cspC | lp_1160 | lp_0997 | Cold shock protein CspP. | Cold shock protein CspC. | 0.735 |
| cspP | cspR | lp_1160 | lp_2211 | Cold shock protein CspP. | 23S rRNA methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | 0.551 |
| cspP | rhe2 | lp_1160 | lp_1162 | Cold shock protein CspP. | ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | 0.645 |
| cspP | rplO | lp_1160 | lp_1055 | Cold shock protein CspP. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.550 |
| cspP | rplT | lp_1160 | lp_1517 | Cold shock protein CspP. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.508 |
| cspP | rpmA | lp_1160 | lp_1594 | Cold shock protein CspP. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.519 |
| cspP | rpmE | lp_1160 | lp_0512 | Cold shock protein CspP. | 50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. Type B subfamily. | 0.597 |
| cspP | rpmJ | lp_1160 | lp_1059a | Cold shock protein CspP. | 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.556 |
| cspP | rpsL | lp_1160 | lp_1025 | Cold shock protein CspP. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.596 |
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