STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1163Nucleotide-binding protein, universal stress protein UspA family. (146 aa)    
Predicted Functional Partners:
lp_0513
Hypothetical protein.
   
    0.844
dps1
DNA-binding ferritin-like protein, DPS family; Belongs to the Dps family.
   
  
 0.737
padR
Transcriptional regulator of phenolic acid metabolism, PadR family.
      
 0.704
lp_3322
Hypothetical protein.
   
    0.643
lp_1539
Lipoprotein precursor.
   
  
 0.563
lp_3045
Short-chain dehydrogenase/oxidoreductase,classical SDR family, subgroup 1.
   
  
 0.561
lp_3353
Hypothetical protein.
   
    0.545
pts14C
PTS system, cellobiose-specific EIIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
  
    0.539
gpo
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
   
  
 0.538
lp_1165
Cell surface hydrolase, DUF915 family.
       0.531
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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