STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppCOligopeptide ABC transporter, permease protein. (344 aa)    
Predicted Functional Partners:
oppB
Oligopeptide ABC transporter, permease protein.
 
 0.999
oppD
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.999
oppF
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.999
oppA
Oligopeptide ABC transporter, substrate binding protein.
 
 0.997
lp_0200
ABC transporter, substrate binding protein.
 
 0.984
glnQ3
Glutamine ABC transporter, ATP-binding protein.
    
 0.927
metN1
D-methionine ABC transporter, ATP binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
  
 0.905
metN2
D-Methionine-like precursor ABC transporter,ATP binding binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
  
 0.904
lp_2739
ABC transporter, ATP-binding protein.
 
 
  
 0.871
lp_0201
ABC transporter, substrate binding protein.
  
 0.853
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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