STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1283Membrane sulfatase, alkaline phosphatase superfamily protein. (701 aa)    
Predicted Functional Partners:
lp_2580
Sulfatase, alkaline phosphatase superfamily,membrane-bound.
  
 
 
0.916
prtM2
Peptidylprolyl isomerase; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins.
 
   
 0.750
rhe1
ATP-dependent RNA helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily.
   
  
 0.722
lp_1877
Hypothetical protein, tetratricopeptide repeat (TPR) family.
 
    0.696
htrA
Serine protease HtrA.
   
  
 0.664
lp_1865
Hypothetical protein, DUF1250 family; Belongs to the UPF0346 family.
  
    0.655
tagG
Teichoic acid ABC transporter, permease protein.
  
    0.648
lp_2304
Transcription regulator, Xre family.
   
    0.626
lp_2243
Type I restriction-modification system,adenine-specific methyltransferase subunit.
  
    0.620
dltB
D-alanyl transfer protein DltB; Could be involved in the transport of activated D-alanine through the membrane.
 
  
 0.602
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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