STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1322Nucleotide-binding protein, universal stress protein UspA family. (168 aa)    
Predicted Functional Partners:
pepV
Xaa-His dipeptidase.
  
  
 0.871
lp_2243
Type I restriction-modification system,adenine-specific methyltransferase subunit.
  
    0.608
trpS
tryptophan-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.555
lp_1703
Diacylglycerol kinase family protein.
   
  
 0.555
lp_1700
Hypothetical membrane protein, TspO/MBR family.
   
  
 0.551
pta
Phosphate acetyltransferase.
  
    0.537
lp_1702
Hypothetical membrane protein, DUF805 family.
   
  
 0.533
hdhD1
D-2-hydroxyacid dehydrogenase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
      
 0.514
rluD1
RNA pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
     
 0.513
trxH
Thioredoxin H-type.
   
 
 0.509
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.