STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1334ABC transporter, permease protein. (245 aa)    
Predicted Functional Partners:
lp_1335
ABC transporter, ATP-binding protein.
 
  
 0.987
lp_1336
Bifunctional protein: ABC transporter,ATP-binding protein; transcription regulator, LytR family.
 
    0.857
lp_1333
Hypothetical protein.
  
    0.737
lp_0252
Hypothetical protein, DUF1341 family.
  
    0.553
lp_1332
Hypothetical membrane protein.
  
    0.526
lp_2774
ABC transporter, ATP-binding protein.
 
  
 0.464
plnT
Hypothetical membrane protein PlnT,membrane-bound protease CAAX family.
  
  
 0.459
plnV
Hypothetical membrane protein plnV,membrane-bound protease CAAX family.
  
  
 0.449
lp_0250
Metallo-dependent hydrolase, subgroup B.
  
     0.441
pnbA
Nitrobenzoate reductase.
  
  
 0.413
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.