STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1342Short-chain dehydrogenase/oxidoreductase,NAD(P)-dependent. (213 aa)    
Predicted Functional Partners:
lp_1341
Transcription regulator, MerR family.
 
    0.827
lp_2569
Hypothetical protein.
  
  
 0.752
lp_1343
Transport protein, EamA family.
  
    0.751
lp_0058
Flavoprotein.
 
     0.717
lp_1310
Glycosyl transferase, group I.
  
    0.712
lp_1187
Glycosylhydrolase.
  
     0.598
sdr
Cell surface SD repeat protein precursor,membrane-anchored.
  
    0.576
lp_3425
Hypothetical protein.
  
     0.559
lp_2715
Hypothetical membrane protein.
  
    0.546
lp_0954
Transcription regulator, MarR family.
  
     0.543
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.