STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1360Transcription regulator, MarR family. (159 aa)    
Predicted Functional Partners:
lp_2113
Hypothetical protein; Belongs to the HesB/IscA family.
   
    0.727
trxA2
Thioredoxin; Belongs to the thioredoxin family.
  
  
 0.722
lp_0126
Stress-responsive transcription regulator.
  
  
 0.659
lp_2230
Hypothetical protein.
   
    0.572
lp_0308
DNA helicase.
      
 0.548
lp_0432
DNA helicase.
      
 0.548
lp_0910
DNA helicase.
      
 0.547
feoB
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
      
 0.544
lp_1362
Hypothetical protein.
  
    0.534
feoA
Ferrous iron transport protein A.
      
 0.528
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (16%) [HD]