STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysCAdenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. (207 aa)    
Predicted Functional Partners:
cysD
Sulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family.
 
 0.999
lp_1380
Phosphoesterase, DHH family.
  
 
 0.984
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
 
      0.900
lp_2279
Phosphoesterase, DHH family.
     
  0.900
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.861
lp_1377
Hypothetical protein.
 
    0.851
lp_0827
Hypothetical protein.
  
  
 0.784
lp_1385
Sodium/sulfate symport protein.
 
  
 0.684
astA
Arylsulfate sulfotransferase.
  
  
 0.593
cbs
Cystathionine beta-synthase.
  
  
 0.574
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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