STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1393ABC transporter, ATP-binding and permease protein. (664 aa)    
Predicted Functional Partners:
lp_2856
ABC transporter, permease protein.
  
 
 0.994
lp_3000
ABC transporter, ATP-binding and permease protein.
 
 
0.940
lp_2823
ABC transporter, ATP-binding protein.
 
 
0.630
lp_2499
ABC transporter, ATP-binding and permease protein.
 
 
0.626
lp_2822
ABC transporter, permease protein.
  
 
 0.617
lp_0299
ABC transporter, ATP-binding protein.
 
 
0.612
lp_2739
ABC transporter, ATP-binding protein.
 
 
0.611
lp_2858
ABC transporter, ATP-binding protein,N-terminal domain.
 
 
0.604
lp_2857
ABC transporter, ATP-binding protein,C-terminal domain.
 
 
0.600
lp_0298
ABC transporter, permease protein.
  
 
 0.590
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.