STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbp2ATranspeptidase-transglycosylase (penicillin binding protein 2A). (709 aa)    
Predicted Functional Partners:
pbp2B
Transpeptidase, penicillin binding protein 2B.
 
 
 0.948
pbp1A
Transpeptidase-transglycosylase (penicillin binding protein 1A).
  
 
0.945
dacA1
Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
 
 
 0.934
dacB
Serine-type D-Ala-D-Ala carboxypeptidase.
   
 
 0.931
dacA2
Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
 
 
 0.929
ftsW
Cell division protein FtsW; Belongs to the SEDS family.
 
 
 
 0.852
pbp2x
Transpeptidase (penicillin binding protein 2B).
 
 
 0.833
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
 
  
 0.801
rodA2
Rod-shape determining protein; Belongs to the SEDS family.
 
 
 0.773
rodA1
Rod-shape determining protein; Belongs to the SEDS family.
 
 
 0.764
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.