STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1417Hypothetical membrane protein. (825 aa)    
Predicted Functional Partners:
lp_1416
Phosphoesterase.
 
 
 0.976
lp_1418
Metal-dependent phosphohydrolase, HD family.
  
    0.857
lp_1415
Hypothetical protein, DUF964 family; Belongs to the UPF0342 family.
 
     0.802
lp_2484
Transcription regulator, MarR family.
  
    0.657
pbp2A
Transpeptidase-transglycosylase (penicillin binding protein 2A).
       0.641
lp_1238
Hypothetical protein.
  
    0.580
lp_2169
Hypothetical protein.
  
    0.514
dnaB
Replication initiation and membrane attachment protein DnaB.
  
    0.513
lp_3417
Transcription regulator, TetR family.
  
    0.483
lp_2485
Hypothetical protein, DUF1975 family.
 
    0.478
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.