STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1455ABC transporter, ATP-binding protein. (245 aa)    
Predicted Functional Partners:
lp_1456
ABC transporter, permease protein.
 
  
 0.939
lp_2739
ABC transporter, ATP-binding protein.
  
0.926
livD
Branched-chain amino acid ABC transporter,ATP-binding protein.
     
0.884
glnQ4
Glutamine/histidine ABC transporter,ATP-binding protein.
 
   
0.819
livC
Branched-chain amino acid ABC transporter,permease protein; Belongs to the binding-protein-dependent transport system permease family.
      0.797
lp_1454
Nucleotide-binding protein, histidine triad family.
  
    0.697
potA
Spermidine/putrescine ABC transporter,ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
   
0.693
lp_1457
Aminoglycoside 3'-phosphotransferase.
  
    0.628
trmB
tRNA (m(7)G46) methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.619
lp_1771
ABC transporter, ATP-binding protein.
  
    0.614
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.