STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufDABC transporter, iron-sulfur cluster assembly protein SufD. (433 aa)    
Predicted Functional Partners:
sufC
ABC transporter, ATP-binding protein,iron-sulfur cluster assembly ATPase protein SufC.
 
 0.999
sufS
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.999
sufU
SUF system FeS assembly protein, NifU family.
 
  
 0.998
sufB
ABC transporter component, iron-sulfur cluster assembly protein SufB, iron regulated.
 
  
0.990
fecB
Iron chelatin ABC transporter, substrate binding protein.
  
    0.774
lp_1482
FeS assembly SUF system protein, DUF59 family.
 
   
 0.767
aroC1
3-dehydroquinate dehydratase.
      
 0.705
narG
Nitrate reductase, alpha chain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
  
 0.648
iolG
Myo-inositol 2-dehydrogenase (promiscuous); Involved in the oxidation of myo-inositol (MI) and D-chiro- inositol (DCI) to 2-keto-myo-inositol (2KMI or 2-inosose) and 1-keto-D- chiro-inositol (1KDCI), respectively.
   
  
 0.561
feoB
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
  
  
 0.557
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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