STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
narGNitrate reductase, alpha chain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1223 aa)    
Predicted Functional Partners:
narH
Nitrate reductase, beta chain.
 0.999
narK
Nitrite extrusion protein.
 
 
 0.996
narI
Nitrate reductase, gamma chain.
 
 0.996
narJ
Nitrate reductase, delta chain.
 
  
 0.967
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.823
cydA
Cytochrome D ubiquinol oxidase, subunit I.
  
  
 0.771
ndh1
NADH dehydrogenase.
   
  
 0.750
sufC
ABC transporter, ATP-binding protein,iron-sulfur cluster assembly ATPase protein SufC.
      
 0.701
sufD
ABC transporter, iron-sulfur cluster assembly protein SufD.
   
  
 0.648
sufB
ABC transporter component, iron-sulfur cluster assembly protein SufB, iron regulated.
   
  
 0.636
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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