rarA protein (Lactobacillus plantarum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rarA

Recombination factor protein RarA; ATPase, AAA family. (458 aa)

Predicted Functional Partners:

lp_3408

0.810

dinP

0.808

cinA

0.731

lp_2279

0.717

ppx1

0.715

ppx2

0.707

umuC

0.701

ppx3

0.555

lp_0960

0.512

hpk5

0.479

Your Current Organism:

Lactobacillus plantarum

NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cinA	dinP	lp_2302	lp_2280	Competence-induced protein,molybdopterin-binding domain; Belongs to the CinA family.	DNA polymerase, DNA-damage-inducible protein P; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	0.686
cinA	lp_2279	lp_2302	lp_2279	Competence-induced protein,molybdopterin-binding domain; Belongs to the CinA family.	Phosphoesterase, DHH family.	0.724
cinA	ppx1	lp_2302	lp_0446	Competence-induced protein,molybdopterin-binding domain; Belongs to the CinA family.	Exopolyphosphatase.	0.670
cinA	ppx2	lp_2302	lp_0841	Competence-induced protein,molybdopterin-binding domain; Belongs to the CinA family.	Exopolyphosphatase.	0.684
cinA	ppx3	lp_2302	lp_0843	Competence-induced protein,molybdopterin-binding domain; Belongs to the CinA family.	Exopolyphosphatase.	0.683
cinA	rarA	lp_2302	lp_1543	Competence-induced protein,molybdopterin-binding domain; Belongs to the CinA family.	Recombination factor protein RarA; ATPase, AAA family.	0.731
cinA	umuC	lp_2302	lp_3023	Competence-induced protein,molybdopterin-binding domain; Belongs to the CinA family.	DNA polymerase V, subunit UmuC.	0.707
dinP	cinA	lp_2280	lp_2302	DNA polymerase, DNA-damage-inducible protein P; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	Competence-induced protein,molybdopterin-binding domain; Belongs to the CinA family.	0.686
dinP	lp_0960	lp_2280	lp_0960	DNA polymerase, DNA-damage-inducible protein P; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	Hypothetical protein.	0.843
dinP	lp_2279	lp_2280	lp_2279	DNA polymerase, DNA-damage-inducible protein P; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	Phosphoesterase, DHH family.	0.886
dinP	ppx1	lp_2280	lp_0446	DNA polymerase, DNA-damage-inducible protein P; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	Exopolyphosphatase.	0.493
dinP	ppx2	lp_2280	lp_0841	DNA polymerase, DNA-damage-inducible protein P; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	Exopolyphosphatase.	0.502
dinP	rarA	lp_2280	lp_1543	DNA polymerase, DNA-damage-inducible protein P; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	Recombination factor protein RarA; ATPase, AAA family.	0.808
dinP	umuC	lp_2280	lp_3023	DNA polymerase, DNA-damage-inducible protein P; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	DNA polymerase V, subunit UmuC.	0.910
hpk5	rarA	lp_1545	lp_1543	Two-component system histidine protein kinase; sensor protein.	Recombination factor protein RarA; ATPase, AAA family.	0.479
lp_0960	dinP	lp_0960	lp_2280	Hypothetical protein.	DNA polymerase, DNA-damage-inducible protein P; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	0.843
lp_0960	rarA	lp_0960	lp_1543	Hypothetical protein.	Recombination factor protein RarA; ATPase, AAA family.	0.512
lp_0960	umuC	lp_0960	lp_3023	Hypothetical protein.	DNA polymerase V, subunit UmuC.	0.737
lp_2279	cinA	lp_2279	lp_2302	Phosphoesterase, DHH family.	Competence-induced protein,molybdopterin-binding domain; Belongs to the CinA family.	0.724
lp_2279	dinP	lp_2279	lp_2280	Phosphoesterase, DHH family.	DNA polymerase, DNA-damage-inducible protein P; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	0.886

page 1 of 4

Server load: low (34%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About