STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbp2xTranspeptidase (penicillin binding protein 2B). (678 aa)    
Predicted Functional Partners:
rodA2
Rod-shape determining protein; Belongs to the SEDS family.
 
 
 0.933
mreC
Cell shape determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.917
pbp1A
Transpeptidase-transglycosylase (penicillin binding protein 1A).
 
 
 0.913
rodA1
Rod-shape determining protein; Belongs to the SEDS family.
 
 
 0.901
ftsW
Cell division protein FtsW; Belongs to the SEDS family.
 
 
 0.896
ftsQ
Cell division initiation protein FtsQ; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.
 
 
 0.866
pkn1
Serine/threonine protein kinase.
  
  
 0.850
pbp2A
Transpeptidase-transglycosylase (penicillin binding protein 2A).
 
 
 0.833
lp_2304
Transcription regulator, Xre family.
  
 
 0.829
murC
UDP-N-acetylmuramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
 
 0.787
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.