STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1571Membrane-bound protease, rhomboid family. (227 aa)    
Predicted Functional Partners:
fthC
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.972
lp_1572
Hypothetical protein.
  
  
 0.825
lp_1573
Bifunctional protein: transcription regulator; sugar kinase, ROK family.
  
    0.795
lytH
N-acetylmuramoyl-L-alanine amidase; Probably involved in cell-wall metabolism. Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family.
  
   0.686
rpmG-2
50S ribosomal protein L33 type 1; Belongs to the bacterial ribosomal protein bL33 family.
  
    0.684
pbp2x
Transpeptidase (penicillin binding protein 2B).
 
   
 0.629
acm3-M
Cell wall hydrolase/muramidase, middle fragment.
  
   0.619
lp_1576
Rhodanese family protein.
  
  
 0.610
lp_2360
Ribosomal protein serine-acetylating enzyme.
  
    0.566
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
    0.536
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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