STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1572Hypothetical protein. (73 aa)    
Predicted Functional Partners:
lp_1573
Bifunctional protein: transcription regulator; sugar kinase, ROK family.
  
    0.842
lp_1571
Membrane-bound protease, rhomboid family.
  
  
 0.825
fthC
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.824
lp_2157
Hypothetical protein; Belongs to the UPF0356 family.
  
  
 0.783
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
    0.717
lp_1865
Hypothetical protein, DUF1250 family; Belongs to the UPF0346 family.
  
  
 0.690
lp_2333
Hypothetical protein, DUF1694 family.
 
    0.677
rpmG-2
50S ribosomal protein L33 type 1; Belongs to the bacterial ribosomal protein bL33 family.
       0.654
lp_3590
Hypothetical protein, DUF1694 family.
 
    0.633
lp_3552
Hypothetical protein, DUF1694 family.
 
    0.604
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.