STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1577Hypothetical extracellular protein. (58 aa)    
Predicted Functional Partners:
lp_2160
Hypothetical protein.
  
    0.735
miaA
tRNA isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
       0.717
lp_2061
Hypothetical protein.
   
    0.716
trxA2
Thioredoxin; Belongs to the thioredoxin family.
   
    0.707
lp_2083
Hypothetical protein, DUF74 family; Belongs to the UPF0145 family.
   
    0.702
rpmF
50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
   
    0.701
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
   
  
 0.671
lp_1459
Extracellular protein, membrane-anchored.
   
    0.666
rpsO
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
    0.658
lp_0126
Stress-responsive transcription regulator.
   
    0.642
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.