Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| dnaG | miaA | lp_1963 | lp_1579 | DNA primase DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | tRNA isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.693 |
| dnaG | ybeY | lp_1963 | lp_1969 | DNA primase DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Metal-binding protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.551 |
| glnA | glnR | lp_1581 | lp_1580 | Glutamate-ammonia ligase. | Glutamine synthetase repressor, MerR family. | 0.987 |
| glnA | glpQ2 | lp_1581 | lp_1578 | Glutamate-ammonia ligase. | Glycerophosphodiester phosphodiesterase. | 0.487 |
| glnA | hexB | lp_1581 | lp_2297 | Glutamate-ammonia ligase. | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.484 |
| glnA | lp_1577 | lp_1581 | lp_1577 | Glutamate-ammonia ligase. | Hypothetical extracellular protein. | 0.481 |
| glnA | miaA | lp_1581 | lp_1579 | Glutamate-ammonia ligase. | tRNA isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.661 |
| glnR | glnA | lp_1580 | lp_1581 | Glutamine synthetase repressor, MerR family. | Glutamate-ammonia ligase. | 0.987 |
| glnR | glpQ2 | lp_1580 | lp_1578 | Glutamine synthetase repressor, MerR family. | Glycerophosphodiester phosphodiesterase. | 0.543 |
| glnR | lp_1577 | lp_1580 | lp_1577 | Glutamine synthetase repressor, MerR family. | Hypothetical extracellular protein. | 0.525 |
| glnR | miaA | lp_1580 | lp_1579 | Glutamine synthetase repressor, MerR family. | tRNA isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.699 |
| glpQ2 | glnA | lp_1578 | lp_1581 | Glycerophosphodiester phosphodiesterase. | Glutamate-ammonia ligase. | 0.487 |
| glpQ2 | glnR | lp_1578 | lp_1580 | Glycerophosphodiester phosphodiesterase. | Glutamine synthetase repressor, MerR family. | 0.543 |
| glpQ2 | lp_1577 | lp_1578 | lp_1577 | Glycerophosphodiester phosphodiesterase. | Hypothetical extracellular protein. | 0.559 |
| glpQ2 | miaA | lp_1578 | lp_1579 | Glycerophosphodiester phosphodiesterase. | tRNA isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.903 |
| hexB | glnA | lp_2297 | lp_1581 | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | Glutamate-ammonia ligase. | 0.484 |
| hexB | miaA | lp_2297 | lp_1579 | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | tRNA isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.771 |
| hexB | prfB-C | lp_2297 | lp_0741 | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | Peptide chain release factor 2, C-terminal fragment (natural frameshift); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.454 |
| hflX | miaA | lp_0896 | lp_1579 | GTPase, HflX subfamily; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | tRNA isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.662 |
| hflX | prfB-C | lp_0896 | lp_0741 | GTPase, HflX subfamily; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Peptide chain release factor 2, C-terminal fragment (natural frameshift); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.661 |
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