Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| argR2 | recN | lp_1604 | lp_1605 | Arginine catabolic regulator; Regulates arginine biosynthesis genes. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.875 |
| argR2 | xseA | lp_1604 | lp_1600 | Arginine catabolic regulator; Regulates arginine biosynthesis genes. | Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.719 |
| argR2 | xseB | lp_1604 | lp_1601 | Arginine catabolic regulator; Regulates arginine biosynthesis genes. | Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.713 |
| dinG | lexA | lp_1737 | lp_2063 | ATP-dependent helicase DinG; 3'-5' exonuclease. | Transcription repressor and protease LexA of the SOS regulon; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.577 |
| dinG | recA | lp_1737 | lp_2301 | ATP-dependent helicase DinG; 3'-5' exonuclease. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.569 |
| dinG | recF | lp_1737 | lp_0005 | ATP-dependent helicase DinG; 3'-5' exonuclease. | DNA repair and genetic recombination protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | 0.409 |
| dinG | recJ | lp_1737 | lp_2087 | ATP-dependent helicase DinG; 3'-5' exonuclease. | Single-strand DNA-specific exonuclease RecJ. | 0.703 |
| dinG | recN | lp_1737 | lp_1605 | ATP-dependent helicase DinG; 3'-5' exonuclease. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.763 |
| dinG | recO | lp_1737 | lp_1966 | ATP-dependent helicase DinG; 3'-5' exonuclease. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.636 |
| dinG | recX | lp_1737 | lp_1240 | ATP-dependent helicase DinG; 3'-5' exonuclease. | Regulatory protein recX; Modulates RecA activity; Belongs to the RecX family. | 0.408 |
| dinG | xseA | lp_1737 | lp_1600 | ATP-dependent helicase DinG; 3'-5' exonuclease. | Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.601 |
| dinG | xseB | lp_1737 | lp_1601 | ATP-dependent helicase DinG; 3'-5' exonuclease. | Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.455 |
| lexA | dinG | lp_2063 | lp_1737 | Transcription repressor and protease LexA of the SOS regulon; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | ATP-dependent helicase DinG; 3'-5' exonuclease. | 0.577 |
| lexA | recA | lp_2063 | lp_2301 | Transcription repressor and protease LexA of the SOS regulon; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.991 |
| lexA | recF | lp_2063 | lp_0005 | Transcription repressor and protease LexA of the SOS regulon; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | DNA repair and genetic recombination protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | 0.442 |
| lexA | recJ | lp_2063 | lp_2087 | Transcription repressor and protease LexA of the SOS regulon; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | Single-strand DNA-specific exonuclease RecJ. | 0.440 |
| lexA | recN | lp_2063 | lp_1605 | Transcription repressor and protease LexA of the SOS regulon; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.854 |
| lexA | recO | lp_2063 | lp_1966 | Transcription repressor and protease LexA of the SOS regulon; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.449 |
| lexA | recX | lp_2063 | lp_1240 | Transcription repressor and protease LexA of the SOS regulon; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | Regulatory protein recX; Modulates RecA activity; Belongs to the RecX family. | 0.597 |
| recA | dinG | lp_2301 | lp_1737 | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | ATP-dependent helicase DinG; 3'-5' exonuclease. | 0.569 |
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