STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuBGlycine betaine/carnitine/choline ABC transporter, permease protein. (209 aa)    
Predicted Functional Partners:
opuC
Glycine betaine/carnitine/choline ABC transporter, substrate binding protein.
 
 0.999
opuA
Glycine betaine/carnitine/choline ABC transporter, ATP-binding protein.
 0.998
opuD
Glycine betaine/carnitine/choline ABC transporter, permease protein.
 
 
0.988
choQ
Glycine betaine/carnitine/choline ABC transporter, ATP-binding protein.
 0.985
choS
Glycine betaine/carnitine/choline ABC transporter, substrate binding and permease protein.
 
 
0.953
mutT
Phosphohydrolase, MutT/nudix family.
   
  
 0.722
mutY
A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
   
  
 0.706
lepA2
GTP-binding translation elongation factor LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
   
  
 0.516
tnpR1
Putative resolvase.
      
 0.503
ISP2_1
Transposase.
      
 0.503
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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