STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuCGlycine betaine/carnitine/choline ABC transporter, substrate binding protein. (311 aa)    
Predicted Functional Partners:
opuA
Glycine betaine/carnitine/choline ABC transporter, ATP-binding protein.
 0.999
opuB
Glycine betaine/carnitine/choline ABC transporter, permease protein.
 
 0.999
opuD
Glycine betaine/carnitine/choline ABC transporter, permease protein.
 
 0.999
choQ
Glycine betaine/carnitine/choline ABC transporter, ATP-binding protein.
 0.987
choS
Glycine betaine/carnitine/choline ABC transporter, substrate binding and permease protein.
 
 
0.958
mutT
Phosphohydrolase, MutT/nudix family.
   
  
 0.696
plsY
Acyl-phosphate glycerol 3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
     
 0.650
citG
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase.
      
 0.639
mutY
A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
   
  
 0.549
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
   
  
 0.546
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.