STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1669Transcription regulator, AraC family. (328 aa)    
Predicted Functional Partners:
lp_1668
Short-chain dehydrogenase/oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.876
pacL3
Cation transporting P-type ATPase.
   
  
 0.718
napA3
Na(+)/H(+) antiporter; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
  
 0.716
pbp2A
Transpeptidase-transglycosylase (penicillin binding protein 2A).
      
 0.709
baiE
Bile acid 7-alpha-dehydratase.
  
     0.595
lp_3024
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
  
 0.572
pnbA
Nitrobenzoate reductase.
  
  
 0.547
ram2
alpha-L-rhamnosidase.
      
 0.542
lp_0340
Hypothetical protein.
      
 0.541
tarJ
Ribitol-5-phosphate 2-dehydrogenase; Catalyzes the NADPH dependent reduction of D-ribulose 5- phosphate to D-ribitol 5-phosphate; Belongs to the zinc-containing alcohol dehydrogenase family.
     
 0.512
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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