STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_17224-aminobutanoate transport protein. (499 aa)    
Predicted Functional Partners:
gabT
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.793
lp_3324
Glycine betaine/carnitine/choline transport protein; Belongs to the BCCT transporter (TC 2.A.15) family.
      
 0.555
pts4ABC
PTS system, trehalose-specific IIBC component.
      
 0.521
pts5ABC
PTS system, trehalose-specific IIBC component.
      
 0.520
treA
Trehalose-6-phosphate hydrolase.
   
 0.506
lp_3643
ABC transporter, permease protein,mannose-related oligosaccharides.
   
  
 0.451
pts2A
PTS system, mannitol-specific EIIA component.
      
 0.449
deoM
Deoxyribose mutarotase.
   
  
 0.433
pts38BC
PTS system, glucitol/sorbitol-specific EIIB component and second of two IIC components.
      
 0.431
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.