STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1738Extracellular protein. (166 aa)    
Predicted Functional Partners:
aspAT
Aspartate aminotransferase.
  
    0.932
dinG
ATP-dependent helicase DinG; 3'-5' exonuclease.
 
    0.872
dnaD
DNA replication protein DnaD.
 
    0.809
lp_1867
Extracellular lipase/acylhydrolase with GDSL-like motif.
  
    0.809
lp_1886
Hypothetical protein.
  
    0.761
asnS2
asparagine-tRNA synthetase.
  
    0.746
lp_0038
Regulator of two-component system, YycH family.
  
    0.742
lp_1884
Extracellular protein, with LysM peptidoglycan binding domain.
  
    0.724
lp_1866
Extracellular protein, DUF2140 family.
  
    0.711
gatA
aspartyl/glutamyl-tRNA amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
   
    0.704
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.