STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1745D-methionine ABC transporter, permease protein. (223 aa)    
Predicted Functional Partners:
metN1
D-methionine ABC transporter, ATP binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 0.999
lp_1746
D-methionine ABC transporter, substrate binding protein.
 0.999
lp_2350
D-Methionine-like precursorABC transporter,substrate binding protein; Belongs to the nlpA lipoprotein family.
 0.999
metN2
D-Methionine-like precursor ABC transporter,ATP binding binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 0.995
lp_3666
Aromatic compound hydratase/decarboxylase.
   
    0.708
lp_1374
Bifunctional protein: homocysteine methyltransferase (cobalamin-dependent); methylenetetrahydrofolate reductase.
  
    0.605
metA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
  
  
 0.569
lp_1768
Muramoyl-tetrapeptide carboxypeptidase, S66 family.
   
    0.552
lp_1082
Malate / lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
   
    0.544
lp_1747
Nucleotide-binding protein, universal stress protein UspA family.
       0.503
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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