STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1748Iron ABC transporter, permease protein. (553 aa)    
Predicted Functional Partners:
lp_1749
Iron ABC transporter, substrate binding protein.
 
 
 0.990
lp_1750
Iron ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.990
potB
Spermidine/putrescine ABC transporter, permease protein.
 
  
 0.841
potD
Spermidine/putrescine ABC transporter,substrate binding protein.
 
  
 0.829
potA
Spermidine/putrescine ABC transporter,ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
 0.716
lp_0923
Cell surface protein precursor, LPXTG-motif cell wall anchor.
  
   
 0.572
lp_2963
Transcription regulator, TetR family.
  
    0.501
recU
Recombinase; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family.
  
    0.465
pbp1A
Transpeptidase-transglycosylase (penicillin binding protein 1A).
       0.460
lp_3006
Transcription regulator, TetR family.
 
     0.458
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.