STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1866Extracellular protein, DUF2140 family. (214 aa)    
Predicted Functional Partners:
lp_1867
Extracellular lipase/acylhydrolase with GDSL-like motif.
 
  
 0.984
lp_1865
Hypothetical protein, DUF1250 family; Belongs to the UPF0346 family.
 
  
 0.944
ctpA
Carboxy-terminal proteinase, S41 family,peptidoglycan-bound; Belongs to the peptidase S41A family.
  
  
 0.778
lp_1877
Hypothetical protein, tetratricopeptide repeat (TPR) family.
 
    0.729
lp_1886
Hypothetical protein.
 
    0.717
lp_1738
Extracellular protein.
  
    0.711
lp_1868
DegV family protein.
  
  
 0.684
lp_2243
Type I restriction-modification system,adenine-specific methyltransferase subunit.
  
    0.631
lp_1459
Extracellular protein, membrane-anchored.
  
    0.579
lp_1159
Extracellular protein, membrane-bound.
  
     0.544
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.