Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| gmk1 | polA | lp_1612 | lp_1508 | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.400 |
| gmk1 | recQ1 | lp_1612 | lp_0962 | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | ATP-dependent DNA helicase RecQ. | 0.780 |
| gmk1 | recQ2 | lp_1612 | lp_1885 | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | ATP-dependent DNA helicase RecQ. | 0.799 |
| gmk1 | topA | lp_1612 | lp_1850 | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.505 |
| hexB | pcrA | lp_2297 | lp_1144 | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | ATP-dependent DNA helicase PcrA. | 0.848 |
| hexB | polA | lp_2297 | lp_1508 | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.996 |
| hexB | recJ | lp_2297 | lp_2087 | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | Single-strand DNA-specific exonuclease RecJ. | 0.901 |
| hexB | recQ1 | lp_2297 | lp_0962 | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | ATP-dependent DNA helicase RecQ. | 0.707 |
| hexB | recQ2 | lp_2297 | lp_1885 | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | ATP-dependent DNA helicase RecQ. | 0.782 |
| hexB | topA | lp_2297 | lp_1850 | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.525 |
| lp_1886 | recQ2 | lp_1886 | lp_1885 | Hypothetical protein. | ATP-dependent DNA helicase RecQ. | 0.976 |
| pcrA | hexB | lp_1144 | lp_2297 | ATP-dependent DNA helicase PcrA. | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.848 |
| pcrA | polA | lp_1144 | lp_1508 | ATP-dependent DNA helicase PcrA. | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.942 |
| pcrA | recJ | lp_1144 | lp_2087 | ATP-dependent DNA helicase PcrA. | Single-strand DNA-specific exonuclease RecJ. | 0.613 |
| pcrA | recQ1 | lp_1144 | lp_0962 | ATP-dependent DNA helicase PcrA. | ATP-dependent DNA helicase RecQ. | 0.815 |
| pcrA | recQ2 | lp_1144 | lp_1885 | ATP-dependent DNA helicase PcrA. | ATP-dependent DNA helicase RecQ. | 0.825 |
| pcrA | topA | lp_1144 | lp_1850 | ATP-dependent DNA helicase PcrA. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.809 |
| pcrA | traI | lp_1144 | gene:17769037 | ATP-dependent DNA helicase PcrA. | DNA topoisomerase. | 0.492 |
| polA | gmk1 | lp_1508 | lp_1612 | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.400 |
| polA | hexB | lp_1508 | lp_2297 | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.996 |
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