STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1886Hypothetical protein. (347 aa)    
Predicted Functional Partners:
recQ2
ATP-dependent DNA helicase RecQ.
 
  
 0.976
lp_1884
Extracellular protein, with LysM peptidoglycan binding domain.
 
    0.834
lp_1877
Hypothetical protein, tetratricopeptide repeat (TPR) family.
 
    0.811
lp_1738
Extracellular protein.
  
    0.761
holB
DNA-directed DNA polymerase III, delta' subunit.
  
    0.734
lp_1891
Hypothetical protein.
 
    0.731
lp_0742
Hypothetical membrane protein.
  
    0.727
cmk
Cytidylate kinase.
  
    0.720
lp_1866
Extracellular protein, DUF2140 family.
 
    0.717
lp_1887
Riboflavin transporter; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.
 
    0.684
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.