Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cmk | era | lp_1883 | lp_1967 | Cytidylate kinase. | Ribosome biogenesis GTPase, Era subfamily; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.418 |
| cmk | lp_1893 | lp_1883 | lp_1893 | Cytidylate kinase. | RNA-binding protein; Belongs to the CvfB family. | 0.435 |
| cmk | rluB | lp_1883 | lp_1888 | Cytidylate kinase. | 16S rRNA pseudouridylate synthase B; Belongs to the pseudouridine synthase RsuA family. | 0.959 |
| cmk | scpA | lp_1883 | lp_1890 | Cytidylate kinase. | Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.776 |
| cmk | scpB | lp_1883 | lp_1889 | Cytidylate kinase. | Chromosome segregation and condensation protein ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.978 |
| era | cmk | lp_1967 | lp_1883 | Ribosome biogenesis GTPase, Era subfamily; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Cytidylate kinase. | 0.418 |
| era | rluB | lp_1967 | lp_1888 | Ribosome biogenesis GTPase, Era subfamily; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 16S rRNA pseudouridylate synthase B; Belongs to the pseudouridine synthase RsuA family. | 0.500 |
| era | scpA | lp_1967 | lp_1890 | Ribosome biogenesis GTPase, Era subfamily; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.569 |
| era | scpB | lp_1967 | lp_1889 | Ribosome biogenesis GTPase, Era subfamily; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Chromosome segregation and condensation protein ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.812 |
| era | tsf | lp_1967 | lp_2054 | Ribosome biogenesis GTPase, Era subfamily; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.604 |
| lp_1891 | lp_1893 | lp_1891 | lp_1893 | Hypothetical protein. | RNA-binding protein; Belongs to the CvfB family. | 0.766 |
| lp_1891 | rluB | lp_1891 | lp_1888 | Hypothetical protein. | 16S rRNA pseudouridylate synthase B; Belongs to the pseudouridine synthase RsuA family. | 0.802 |
| lp_1891 | scpA | lp_1891 | lp_1890 | Hypothetical protein. | Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.939 |
| lp_1891 | scpB | lp_1891 | lp_1889 | Hypothetical protein. | Chromosome segregation and condensation protein ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.875 |
| lp_1891 | smc | lp_1891 | lp_1632 | Hypothetical protein. | Cell division protein Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.506 |
| lp_1891 | xerD | lp_1891 | lp_1892 | Hypothetical protein. | Integrase/recombinase, XerC/CodV family; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.698 |
| lp_1893 | cmk | lp_1893 | lp_1883 | RNA-binding protein; Belongs to the CvfB family. | Cytidylate kinase. | 0.435 |
| lp_1893 | lp_1891 | lp_1893 | lp_1891 | RNA-binding protein; Belongs to the CvfB family. | Hypothetical protein. | 0.766 |
| lp_1893 | rluB | lp_1893 | lp_1888 | RNA-binding protein; Belongs to the CvfB family. | 16S rRNA pseudouridylate synthase B; Belongs to the pseudouridine synthase RsuA family. | 0.801 |
| lp_1893 | scpA | lp_1893 | lp_1890 | RNA-binding protein; Belongs to the CvfB family. | Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.804 |
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