STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1908Hypothetical membrane protein. (401 aa)    
Predicted Functional Partners:
lp_3134
Extracellular protein, DUF 1093 family,membrane-bound.
   
    0.705
cps3B
Glycosyltransferase, family 2 (GT2).
  
  
 0.530
cps4E
Polysaccharide biosynthesis polyprenyl glycosylphosphotransferase, priming glycosyltransferase.
  
  
 0.499
cps2E
Priming glycosyltransferase, polyprenyl glycosylphosphotransferase.
  
  
 0.493
lp_1233
Priming glycosyltransferase,undecaprenyl-phosphate beta-glucosephosphotransferase.
  
  
 0.489
lp_0875
Hypothetical protein.
   
    0.487
cps1C
Oligosaccharide transporter (flippase).
  
  
 0.458
cps2I
Oligosaccharide transporter (flippase).
  
  
 0.458
lp_1231
Oligosaccharide transporter (flippase).
  
  
 0.458
cps4J
Polysaccharide repeat unit transporter (flippase).
  
  
 0.458
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.