STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
drrAABC transporter, ATP-binding protein,daunorubicin resistance family A (Drr). (313 aa)    
Predicted Functional Partners:
drrB
ABC transporter, permease protein, daunorubicin resistance family B (Drr).
  
 0.996
lp_2739
ABC transporter, ATP-binding protein.
  
0.916
lp_1911
Transcription regulator, MarR family.
 
    0.852
orf40
Hypothetical protein.
      
 0.840
orf41
Hypothetical protein.
      
 0.840
lp_2773
ABC transporter, permease protein.
  
 0.612
livC
Branched-chain amino acid ABC transporter,permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.612
lp_2823
ABC transporter, ATP-binding protein.
  
0.577
orf37
Hypothetical protein.
      
 0.549
traA
Nickase.
      
 0.542
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.