STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1916Hypothetical membrane protein. (368 aa)    
Predicted Functional Partners:
cps1E
Acyltransferase/acetyltransferase.
     
 0.845
lp_0856
Acyltransferase.
      
 0.840
lp_0925
Acyltransferase.
      
 0.840
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
  
  
 0.716
lp_1918
NAD(P)(H)-dependent oxidoreductase, quinone oxidoreductase (QOR) family.
 
    0.541
lp_2613
ABC transporter, permease protein.
  
    0.468
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
      
 0.465
lp_2804
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.463
lp_3239
Short-chain dehydrogenase/oxidoreductase,atypical SDR family, TMR-like.
  
    0.451
lp_1935
Cell surface hydrolase, membrane-bound.
  
    0.433
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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