STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1929Hypothetical protein, DUF1722 family. (129 aa)    
Predicted Functional Partners:
lp_3573
Pyrimidine dimer DNA glycosylase.
 
    0.700
lp_1703
Diacylglycerol kinase family protein.
  
    0.505
spx2
RNA polymerase (RNAP)-binding regulatory protein, arsenate reductase (ArsC) family, Spx subfamily; Belongs to the ArsC family.
  
    0.497
lp_0763
Hypothetical protein, DUF3290 family.
  
    0.478
lp_1930
Oxidoreductase, atypical SDR family, subgroup 6.
  
    0.444
lp_2690
Short-chain dehydrogenase, atypical SDR family,subgroup 5.
  
    0.441
lp_2804
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
   
    0.431
lp_1764
Muramoyl-tetrapeptide carboxypeptidase, S66 family.
  
     0.418
lp_0130
Two-component system sensor protein.
  
    0.403
lp_0513
Hypothetical protein.
   
    0.403
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.